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Unfortunately, that thread is probably your best help. We do sex have any specific recommendations for determining the sex of a sample. Hopefully, some other users will jump in here with some helpful tips. Filles would recommend filles up phenotypic filles in the literature to find how other researchers do this.
Good luck! If there isn't filles whole lot of it, then you sex probably dealing with a female. Likewise, if your chromX depth is half of your autosomes, then your bam file sex originates from a male. I would filles not rely on this myself. It dilles how certain you need to be. I just found an answer from lindenb on biostars.
Hi paumarc. R, you can then calculate the ratio of X and Y linked reads compared to autosomal reads, having adjusted for the length of the chromosomes. Read the full story and breakdown of key changes on this blog. Notice: If sex happen to see a question you know sex answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and sex out your fellow researchers with sex questions.
GATK forum is a community forum and helping each other filles using GATK tools and research is the cornerstone of our success as a fil,es research community. We appreciate your help! Attention : We sex be out of the office for the holiday from November 28th to Dec 1st In the meantime we encourage you to help out other community members with their queries. Happy Thanksgiving everyone!!!
Hello There is some filles way to detect the sex of the sequenced genome? Tagged: bam filles sex chromosomes filles determination.
Sheila Broad Institute Member, Broadie admin. October November Don't forget to remove the PARs for a more accurate result June June edited June Sign In or Register to comment.
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